NAME

       mia-3dtrackpixelmovement - Track positions in 3D

SYNOPSIS

       mia-3dtrackpixelmovement -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

       mia-3dtrackpixelmovement  Track  the  position  of a pixel by means of a transformation obtained by using
       image registration. The pixel data is given in CSV format
          id;time;x;y;z;reserved

       The fields 'time', 'x', 'y', and 'z' are updated, and the fields 'id' and 'reserved' are preserved, empty
       lines are ignored.

OPTIONS

   File-IO
              -i --in-file=(input, required); string
                     input point set

              -o --out-file=(output, required); string
                     output point set

              -t --transformation=(input, required); io
                     transformation describing the monitored change
                      For supported file types see PLUGINS:3dtransform/io

   Parameters
              -T --time-step=1
                     time step to use for the position update

   Help & Info
              -V --verbose=warning
                     verbosity of output, print  messages  of  given  level  and  higher  priorities.  Supported
                     priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum  number  of  threads to use for processing,This number should be lower or equal to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dtransform/io

       bbs       Binary (non-portable) serialized IO of 3D transformations

                     Recognized file extensions:  .bbs

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       vista     Vista storage of 3D transformations

                     Recognized file extensions:  .v, .v3dt

       xml       XML serialized IO of 3D transformations

                     Recognized file extensions:  .x3dt

EXAMPLE

       This program evaluated the changed position of pixels given in input.csv, by using  a time  step  of  2.0
       time units and the transformation change.v3df, and writes the updated positions to updated.csv.

       mia-3dtrackpixelmovement -i input.csv -o output.cvs --time-step 2.0 --transformation change.v3df

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with  ABSOLUTELY
       NO WARRANTY  and  you  may redistribute it under the terms of the GNU GENERAL PUBLIC  LICENSE  Version  3
       (or later). For more information run the program with the option '--copyright'.

USER COMMANDS                                        v2.4.7                          mia-3dtrackpixelmovement(1)