NAME

       pxmrcaname - label internal nodes with clade names

SYNOPSIS

       pxmrcaname [OPTIONS]...

DESCRIPTION

       Label  internal  nodes with clade names.  This will take a newick- or nexus-formatted tree from a file or
       STDIN, and an MRCA file with format:

              MRCANAME = tip1 tip2 ...

   If no MRCA file is present, internal nodes will be labelled:
              px1, px2, ..., pxn

       Output is written in newick format.

OPTIONS

       -t, --treef=FILE
              input newick tree file, STDIN otherwise

       -m, --mrca=FILE
              file containing MRCA declarations

       -o, --outf=FILE
              output newick file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim), Joseph W. Brown

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2013-2024 FePhyFoFum License GPLv3

pxmrcaname 1.3.1                                    June 2024                                      PXMRCANAME(1)