NAME

       pxfqfilt - filter fastq files by mean quality

SYNOPSIS

       pxfqfilt [OPTIONS]...

DESCRIPTION

       Filter fastq files by mean quality.  Data can be read from a file or STDIN.

OPTIONS

       -m, --mean=VALUE
              mean value under which seqs are filtered

       -s, --seqf=FILE
              input sequence file, STDIN otherwise

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim)

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2013-2024 FePhyFoFum License GPLv3

pxfqfilt 1.3.1                                      June 2024                                        PXFQFILT(1)