NAME

       ktImportMETAREP-EC - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

              Creates  a Krona chart of abundances of EC (Enzyme Commission) numbers in METAREP data folders. By
              default, queries with no EC number will be ignored (see -i).

       ktImportMETAREP-EC \

              [options] \ metarep_folder_1[,name_1] \ [metarep_folder_2[,name_2]] \ ...

       metarep_folder
              Unpacked METAREP data folder. By default, separate datasets will be created for  each  input  (see
              [-c]).

       name   A name to show in the list of datasets in the Krona chart (if multiple input files are present and
              [-c] is not specified). By default, the basename of the file will be used.

       [-o <string>]
              Output file name. [Default: 'metarep-ec.krona.html']

       [-n <string>]
              Name of the highest level. [Default: 'root']

       [-c]   Combine data from each file, rather than creating separate datasets within the chart.

       [-i]   Include a wedge for queries with no hits.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-u <string>]
              URL   of   Krona   resources   to   use   instead   of   bundling   them   with  the  chart  (e.g.
              "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not
              work without access to this URL.

       [-qp <string>]
              Url to send query IDs to (instead of listing them) for each wedge. The query IDs will be sent as a
              comma separated list in the POST variable "queries", with the current dataset index  (from  0)  in
              the POST variable "dataset". The url can include additional variables encoded via GET.

       [-v]   Verbose.

ktImportMETAREP-EC 2.8                              June 2021                              KTIMPORTMETAREP-EC(1)