NAME

       ktGetLCA - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Description:

              Computes the lowest common ancestor for accessions or taxonomy IDs (as arguments or from <stdin>).
              If  an  input  is  a number, it is assumed to be a taxonomy ID; otherwise it will be considered an
              accession or sequence ID containing an accession in  the  fourth  field  of  pipe  notation  (e.g.
              "gi|12345|xx|ABC123.1|", ignoring fasta/fastq tag markers [>,@]). If using <stdin>, the LCA can be
              computed  for  the  first  fields  of  all  input lines (default), or per input line, separated by
              whitespace (see -s).

       Usage:

              ktGetLCA [options] [acc/tax_ID ...] [< acc/taxID_list] > LCA

OPTIONS

       -s     Streaming mode. Each line is expected to be a whitespace-separated list of  inputs  for  a  single
              lowest  common  ancestor  computation. Taxonomy will be preloaded, allowing for faster computation
              after a small upfront time.

ktGetLCA 2.8                                        June 2021                                        KTGETLCA(1)