NAME

       fastaq_add_indels - Deletes or inserts bases at given position(s)

DESCRIPTION

       usage: fastaq_add_indels [options] <infile> <outfile>

       Deletes or inserts bases at given position(s)

   positional arguments:
       infile Name of input file

       outfile
              Name of output file

   options:
       -h, --help
              show this help message and exit

       -d Name:start:bases, --delete Name:start:bases
              Delete the given bases from the given sequence. Format same as samtools view: name:start-end. This
              option  can  be  used  multiple times (once for each region to delete). Overlapping coords will be
              merged before deleting

       --delete_range P,start,step
              Deletes bases starting at position P  in  each  sequence  of  the  input  file.  Deletes  start  +
              (n-1)*step bases from sequence n.

       -i Name:start:bases, --insert Name:start:bases
              Insert  a  random  string  of bases at the given position.  Format is name:position:number_to_add.
              Bases are added after the position. This option can be used multiple times

       --insert_range P,start,step
              Inserts random bases starting after position P in each sequence of the input file. Inserts start +
              (n-1)*step bases into sequence n.

fastaq_add_indels 3.17.0                          December 2024                             FASTAQ-ADD_INDELS(1)