NAME

       beauti2 - matches beast2-mcmc

SYNOPSIS

       beauti2  -template  [template  file]  -nex  [nexus  data file] -xmldat [beast xml file] -xml [beast file]
       -exitaction [writexml|usetemplate|usexml] -out [output file name] -capture -v -version -h -help

DESCRIPTION

       BEAST is a cross-platform program for Bayesian MCMC analysis  of  molecular  sequences.  It  is  entirely
       orientated  towards  rooted,  time-measured  phylogenies inferred using strict or relaxed molecular clock
       models. It can be used as a method of reconstructing phylogenies but is  also  a  framework  for  testing
       evolutionary  hypotheses  without conditioning on a single tree topology. BEAST uses MCMC to average over
       tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple
       to use user-interface program for setting up standard analyses and a suit of programs for  analysing  the
       results.

       This BEAUTI version matches BEAST2-MCMC.

OPTIONS

       -template [template file] : BEAUti template to be used. Default templates/Standard.xml

       -nex [nexus data file] : nexus file to be read using template, multiple -nex arguments are allowed

       -xmldat [beast xml file] : as -nex but with BEAST 1 or 2 xml file instead of nexus file

       -xml [beast file] : BEAST 2 XML file to be loaded

       -exitaction [writexml|usetemplate|usexml] : what to do after processing arguments

       -out [output file name] : file to be written

       -capture : captures stdout and stderr and make them available under Help/Messages menu

       -v, -version : print version

       -h, -help : print this help message

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

beauti2 2.4.1                                       May 2016                                          BEAUTI2(1)