NAME

       bam2starch_sge - manual page for bam2starch_sge 2.4.41+dfsg

SYNOPSIS

       bam2starch_sge [--help] [--clean] <input-indexed-bam-file> [output-starch-file]

DESCRIPTION

              Pass in the name of an indexed BAM file to create a Starch archive using the cluster.

              (stdin isn't supported through this wrapper script, but Starch supports it natively.)

              Add --clean to remove <input-indexed-bam-file> after starching it up.

              You  can  pass in the name of the output Starch archive to be created.  Otherwise, the output will
              have the same name as the input file, with an additional

       '.starch' ending.
              If the input file ends with '.bam', that will be stripped off.

SEE ALSO

       The full documentation  for  bam2starch_sge  is  maintained  as  a  Texinfo  manual.   If  the  info  and
       bam2starch_sge programs are properly installed at your site, the command

              info bam2starch_sge

       should give you access to the complete manual.

bam2starch_sge 2.4.41+dfsg                        December 2024                                BAM2STARCH_SGE(1)