NAME

       bam2starch_slurm - manual page for bam2starch_slurm 2.4.41+dfsg

SYNOPSIS

       bam2bed_slurm [--help] [--clean] <input-indexed-bam-file> [output-bed-file]

DESCRIPTION

              Pass in the name of an indexed BAM file to create a sorted BED file using the cluster.

              (stdin isn't supported through this wrapper script.)

              Add --clean to remove <input-indexed-bam-file> after turning it into BED.

              You can pass in the name of the output bed archive to be created.  Otherwise, the output will have
              the same name as the input file, with an additional

       '.bed' ending.
              If the input file ends with '.bam', that will be stripped off.

SEE ALSO

       The  full  documentation  for  bam2starch_slurm  is  maintained  as  a  Texinfo  manual.  If the info and
       bam2starch_slurm programs are properly installed at your site, the command

              info bam2starch_slurm

       should give you access to the complete manual.

bam2starch_slurm 2.4.41+dfsg                      December 2024                              BAM2STARCH_SLURM(1)