NAME

       cnvkit_antitarget - Derive off-target ("antitarget") bins from target regions.

DESCRIPTION

       usage: cnvkit.py antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]

       [-o FILENAME]
              targets

   positional arguments:
       targets
              BED or interval file listing the targeted regions.

   options:
       -h, --help
              show this help message and exit

       -g FILENAME, --access FILENAME
              Regions of accessible sequence on chromosomes (.bed), as output by genome2access.py.

       -a AVG_SIZE, --avg-size AVG_SIZE
              Average size of antitarget bins (results are approximate). [Default: 150000]

       -m MIN_SIZE, --min-size MIN_SIZE
              Minimum  size  of  antitarget  bins  (smaller  regions  are  dropped).  [Default:  1/16  avg size,
              calculated]

       -o FILENAME, --output FILENAME
              Output file name.

cnvkit.py antitarget 0.9.10                         July 2023                               CNVKIT_ANTITARGET(1)