NAME

       run_tipp_tool.py - helper tool to convert a classification file into a profile

DESCRIPTION

       usage: run_tipp_tool.py [-h] [-g GENE] [-o OUTPUT] [-d OUTPUT_DIR] [-i INPUT] [-t THRESHOLD]

       Performs various tools for TIPP.

   optional arguments:
       -h, --help
              show this help message and exit

       -g GENE, --gene GENE
              use GENE's reference package

       -o OUTPUT, --output OUTPUT
              output files with prefix OUTPUT. [default: output]

       -d OUTPUT_DIR, --outdir OUTPUT_DIR
              output to OUTPUT_DIR directory. full-path required. [default: .]

       -i INPUT, --input INPUT
              input file. full-path required. (_classification.txt file from running run_tipp.py)

       -t THRESHOLD, --threshold THRESHOLD
              Threshold for classification [default: 0.95]

SEE ALSO

       run_tipp.py(1)

run_tipp_tool.py                                 September 2021                              RUN_TIPP_TOOL.PY(1)