NAME

       bowtie-align-s - ultrafast memory-efficient short read aligner

DESCRIPTION

       usage: bowtie [-h] [--verbose] [--debug] [--large-index]

   optional arguments:
       -h, --help
              show this help message and exit

       --verbose

       --debug

       --large-index

       64-bit Built on Debian-reproducible Tue, 14 Sep 2021 07:01:35 +0200 Compiler: gcc version 11.2.0 Options:
       -O3     -Wl,--hash-style=both     -DPOPCNT_CAPABILITY     -Wdate-time    -D_FORTIFY_SOURCE=2    -g    -O2
       -ffile-prefix-map=.=.      -flto=auto      -ffat-lto-objects      -fstack-protector-strong       -Wformat
       -Werror=format-security       -g      -O2      -ffile-prefix-map=.=.     -flto=auto     -ffat-lto-objects
       -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -Wl,-Bsymbolic-functions  -flto=auto
       -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

bowtie-align-s version 1.3.1                     September 2021                                BOWTIE-ALIGN-S(1)